Hi Tom, the X8R has been used by quite a few other users on this forum with success, so we know it is possible. There are however as you have found discrepancies between the different firmware versions that FrSky uses and there are multiple posts of people having issues getting that all straightened out, which I suspect is the case here as well.
The first thing you should do when there are radio problems is to run through Radio Setup once again. It could be that channel orders have been changed under the new firmware, or something like that. But at any rate, Radio Setup will show you visually and immediately which channels are being read by the TCB and which are not. If it's simply a channel order problem, then you can re-arrange them.
If some channels are not appearing at all, then I think the issue is likely between the transmitter and the receiver, or with the setup on your transmitter, and that I can't help you with, but perhaps your contact at FrSky can (who I see is also a member on this forum, so perhaps he will chime in).